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Table 5 Quality of predicted structures using the original weights of energy terms and the weights acquired from protein 1iieA

From: Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling

  

Quality of the predicted structure

Protein

SCOP family

Using original weights

Using weights acquired from 1iieA

1p7iA

a.4.1.1

0.688 Ã…

0.549 Ã…

1am9A

a.38.1.1

2.129 Ã…

1.074 Ã…

1cktA

a.21.1.1

1.675 Ã…

1.147 Ã…

1oqpA

a.39.1.5

1.697 Ã…

1.273 Ã…

1n1jB

a.22.1.3

2.029 Ã…

1.567 Ã…

1nkpA

a.38.1.1

1.991 Ã…

1.645 Ã…

1nkpB

a.38.1.1

2.444 Ã…

1.685 Ã…

1bw5A

a.4.1.1

2.273 Ã…

1.891 Ã…

1of9A

a.64.1.4

1.945 Ã…

2.053 Ã…

1q08A

a.6.1.3

2.584 Ã…

2.316 Ã…

1dgnA

a.77.1.3

10.376 Ã…

2.577 Ã…

1ow5A

a.60.1.2

3.082 Ã…

2.659 Ã…

1aoyA

a.4.5.3

3.035 Ã…

2.756 Ã…

1hstA

a.4.5.13

3.987 Ã…

3.031 Ã…

3ygsP

a.77.1.3

8.804 Ã…

3.14 Ã…

1psrA

a.39.1.2

4.700 Ã…

3.451 Ã…

1pueE

a.4.5.21

9.321 Ã…

3.545 Ã…

1ngrA

a.77.1.2

8.480 Ã…

3.942 Ã…

1hb6A

a.11.1.1

4.138 Ã…

4.542 Ã…

1ctjA

a.3.1.1

9.693 Ã…

6.29 Ã…

  1. On 19 out of the 20 benchmark proteins, the predicted structures have RMSD less than 5 Ã…. On 18 out of these benchmark proteins, the predicted structures using the weights acquired from 1iieA are better than those predicted using the original weights