Table 3 The codon groups of the best genetic code in terms of the fitness function F extracted from 50 independent simulations under the M2 scenario
From: The influence of different types of translational inaccuracies on the genetic code structure
Codon group (S) | k | ψ(S) | ϕ(S) | ϕk(G) |
|---|---|---|---|---|
{CAT,CAG,CAC,CTG,CGG,CCG} | 6 | 0.9867038 | \(\frac {36}{54}\) | \(\frac {36}{54}\) |
{CAA,CTA,CTT,CTC,CGA,CCA} | 6 | 0.9866648 | \(\frac {35}{54}\) | \(\frac {36}{54}\) |
{GAG,GAC,GGC,GCC} | 4 | 1.0000000 | \(\frac {7}{9}\) | \(\frac {2}{3}\) |
{GAA,GGA,GGG,GCA} | 4 | 1.0000000 | \(\frac {7}{9}\) | \(\frac {2}{3}\) |
{GAT,GTT,GTG,GCT} | 4 | 0.8262542 | \(\frac {7}{9}\) | \(\frac {2}{3}\) |
{GTA,GTC,GGT,GCG} | 4 | 0.7837840 | \(\frac {34}{36}\) | \(\frac {2}{3}\) |
{ATC,AGC,ACC,CCT} | 4 | 0.6426162 | \(\frac {5}{6}\) | \(\frac {2}{3}\) |
{ATT,AGT,ACT} | 3 | 0.8457703 | \(\frac {7}{9}\) | \(\frac {7}{9}\) |
{ATA,AGA,ACA} | 3 | 0.8136870 | \(\frac {7}{9}\) | \(\frac {7}{9}\) |
{AAT,AAG,AGG} | 3 | 0.7359857 | \(\frac {23}{27}\) | \(\frac {7}{9}\) |
{AAA,AAC,CGC} | 3 | 0.7170777 | \(\frac {25}{27}\) | \(\frac {7}{9}\) |
{TAA,TAC,TTC} | 3 | 0.5927813 | \(\frac {23}{27}\) | \(\frac {7}{9}\) |
{TCT,TCG,CCC} | 3 | 0.5598730 | \(\frac {25}{27}\) | \(\frac {7}{9}\) |
{TTA,TCA,CGT} | 3 | 0.4932700 | \(\frac {25}{27}\) | \(\frac {7}{9}\) |
{ATG,ACG} | 2 | 0.8650405 | \(\frac {8}{9}\) | \(\frac {8}{9}\) |
{TAT,TAG} | 2 | 0.8027995 | \(\frac {8}{9}\) | \(\frac {8}{9}\) |
{TTT,TGT} | 2 | 0.7850055 | \(\frac {8}{9}\) | \(\frac {8}{9}\) |
{TGC,TCC} | 2 | 0.7838025 | \(\frac {8}{9}\) | \(\frac {8}{9}\) |
{TGA} | 1 | 1.0000000 | 1 | 1 |
{TTG} | 1 | 0.9967190 | 1 | 1 |
{TGG} | 1 | 0.5734410 | 1 | 1 |