From: ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark
Number of threads
1
8
16
24
32
GATK3.8 HaplotypeCaller
1372.33
369.77
356.21
361.19
326.48
ADS-HCSpark
1384.21
180.07
110.40
92.34
83.81