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Table 7 Comparison of execution time on D1 (unit: min)

From: ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark

Number of threads

1

8

16

24

32

GATK3.8 HaplotypeCaller

1372.33

369.77

356.21

361.19

326.48

ADS-HCSpark

1384.21

180.07

110.40

92.34

83.81