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Table 1 The values of super-parameter tuning

From: DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins

Super-Parameter Preferred Setting
Embedding length 21
Batch size 65
Maximum epoch 30
Convolution blocks ([2–6], 64, ReLU)
Fully connected layer units 128
Cutoff 0.5
Dropout 0.7
Learning rate 0.01 with decay rate 0.95
Regularization L2