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Table 6 The DeepUbi results for the same number of samples as the other existing tools

From: DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins

No. of positive samples Acc (%) Sn (%) Sp (%) AUC MCC
UbiPred 84.44 83.44 85.43 0.85 0.69
DeepUbi 98.77 98.87 98.67 0.9993 0.98
UbPred 72.0 0.79
DeepUbi 98.51 98.45 98.57 0.9975 0.97
UbSite 74.5 65.5 74.8
DeepUbi 97.99 97.79 98.18 0.9933 0.96
CKSAAP_UbSite 73.4 69.85 76.96 0.81 0.47
DeepUbi 99.19 98.96 99.42 0.9959 0.98
UbiProber 37.0 90.0 0.77 0.63
DeepUbi 91.83 90.12 93.55 0.9093 0.84
hCKSAAP_UbSite 0.77
DeepUbi 94.10 92.31 95.89 0.9289 0.88
iUbiq-Lys 82.14 80.56 99.39 0.50
DeepUbi 98.92 98.90 98.93 0.9913 0.98
ESA-UbiSite 94.0 96.0 92.0 0.92
DeepUbi 95.59 95.53 95.65 0.9947 0.91