Table 6 The DeepUbi results for the same number of samples as the other existing tools
From: DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins
No. of positive samples | Acc (%) | Sn (%) | Sp (%) | AUC | MCC |
|---|---|---|---|---|---|
UbiPred | 84.44 | 83.44 | 85.43 | 0.85 | 0.69 |
DeepUbi | 98.77 | 98.87 | 98.67 | 0.9993 | 0.98 |
UbPred | 72.0 | – | – | 0.79 | – |
DeepUbi | 98.51 | 98.45 | 98.57 | 0.9975 | 0.97 |
UbSite | 74.5 | 65.5 | 74.8 | – | – |
DeepUbi | 97.99 | 97.79 | 98.18 | 0.9933 | 0.96 |
CKSAAP_UbSite | 73.4 | 69.85 | 76.96 | 0.81 | 0.47 |
DeepUbi | 99.19 | 98.96 | 99.42 | 0.9959 | 0.98 |
UbiProber | – | 37.0 | 90.0 | 0.77 | 0.63 |
DeepUbi | 91.83 | 90.12 | 93.55 | 0.9093 | 0.84 |
hCKSAAP_UbSite | – | – | – | 0.77 | – |
DeepUbi | 94.10 | 92.31 | 95.89 | 0.9289 | 0.88 |
iUbiq-Lys | 82.14 | 80.56 | 99.39 | – | 0.50 |
DeepUbi | 98.92 | 98.90 | 98.93 | 0.9913 | 0.98 |
ESA-UbiSite | 94.0 | 96.0 | 92.0 | – | 0.92 |
DeepUbi | 95.59 | 95.53 | 95.65 | 0.9947 | 0.91 |