Table 1 10 times repeated 5-fold cross-validated F1 score in five 1000 Genomes Project superpopulations using SVM, PCA or GTM
From: Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics
Ancestry | 1000G code | PCA 8-NN | SVM 10 PCs | GTM 3 PCs | GTM 10 PCs |
|---|---|---|---|---|---|
Africans | AFR | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 |
Admixed Americans | AMR | 0.93±0.00 | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 |
East Asians | EAS | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 |
Europeans | EUR | 0.99±0.00 | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 |
South Asians | SAS | 0.93±0.01 | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 |
Overall F1 score | 0.98±0.00 | 1.00±0.00 | 1.00±0.00 | 1.00±0.00 |