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Table 1 DecontaMiner, TruePure and FastQScreen feature comparison

From: From trash to treasure: detecting unexpected contamination in unmapped NGS data

   DecontaMiner TruePure FastQScreen
Input type: bam \(\checkmark \) × ×
  fastq \(\checkmark \) \(\checkmark \) \(\checkmark \)
  fasta \(\checkmark \) \(\checkmark \) ×
  Multiple samples processing \(\checkmark \) × ×
  Paired end processing \(\checkmark \) × ×
  Unlimited input \(\checkmark \) × ×
  User defined databases \(\checkmark \) × \(\checkmark \)
  Read tracking \(\checkmark \) × ×
  Parameter tuning \(\checkmark \) × ×
  Runs on HPC \(\checkmark \) × \(\checkmark \)
  Visual output \(\checkmark \) \(\checkmark \) \(\checkmark \)