From trash to treasure: detecting unexpected contamination in unmapped NGS data

BMC Bioinformatics

Table 1 DecontaMiner, TruePure and FastQScreen feature comparison

		DecontaMiner	TruePure	FastQScreen
Input type:	bam	\(\checkmark \)	×	×
	fastq	\(\checkmark \)	\(\checkmark \)	\(\checkmark \)
	fasta	\(\checkmark \)	\(\checkmark \)	×
	Multiple samples processing	\(\checkmark \)	×	×
	Paired end processing	\(\checkmark \)	×	×
	Unlimited input	\(\checkmark \)	×	×
	User defined databases	\(\checkmark \)	×	\(\checkmark \)
	Read tracking	\(\checkmark \)	×	×
	Parameter tuning	\(\checkmark \)	×	×
	Runs on HPC	\(\checkmark \)	×	\(\checkmark \)
	Visual output	\(\checkmark \)	\(\checkmark \)	\(\checkmark \)

ISSN: 1471-2105