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Table 3 Species detection: precision and recall for DecontaMiner, TruePure and FastQScreen

From: From trash to treasure: detecting unexpected contamination in unmapped NGS data

  DecontaMiner TruePurea FastQScreenb
  Precision Recall Precision Recall Precision Recall
Bacteria 0.82 0.9 0.67 1 NA NA
Fungi 1 1 0 0 NA NA
Viruses 0.92 1 0.53 0.89 NA NA
  1. aThese are the results on the manually curated input file
  2. bFastQScreen does not provide a detailed report on the distribution of the hits found