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Table 1 Comparison of sub-selection test between different families with different number of selected sequences

From: Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

Num of sequences

Coverage

Computational time

2

5%

1m

10

51%

5m

20

62%

10m

50

70%

15m

100

74%

30m

250

78%

2h

500

83%

5h

1000

90%

16h

> 2000

∼ 100%

> 2d

  1. The number of sequences, the motif coverage in percentage (which is the average of 10 repeated test) and the computational time on 1 CPU are shown