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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking

Fig. 3

Phase 2 model. Petri net obtained by SBML import of the model presented in [24], mimicking the original layout, but rotated by 180 degrees. Note that we have removed the two transitions describing the phosphorylation of AI-2 and the transportation of AI-2 back into the cell since they occur in the Phase 3 biofilm formation part. All transition rates follow mass-action kinetics with specific rate constants (not shown); see Additional fileĀ 2 for details. Colour code: source places highlighted in green and genes in red. This model can be equally read as SPN or CPN

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