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Table 4 Phase 3 Transitions

From: Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking

Transition Name

Biological action

BasalProduceLsrABCD

Basal production of LsrABCD proteins

BasalProduceLsrK

Basal production of LsrK protein

BasalProduceLsrR

Basal production of LsrR protein

Biofilmformation_AI2

Biofilm formation via AI_2

Biofilmformation_LsrR

Biofilm formation via LsrR

close

Closure of AI2 import control system

derepress

Derepression of lsr genes

inflow

Inflow of diffused AI2

LsrABCD_deg

Degradation of LsrABCD complex

LsrK_deg

LsrK degradation

LsrR_AI2_P_deg

LsrR_AI2_P degradation

LsrR_deg

LsrR degradation

open

Opening of AI2 import control system

Phosphorylation

AI_2 Phosphorylation

repress

Repression of lsr genes

TranscribeTranslate

Trascription and translation of lsr genes

Transport_in

Importation of AI_2 into the cell