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Table 1 Comparison of GenHap and HapCol on the Roche/454 dataset with cov30×

From: GenHap: a novel computational method based on genetic algorithms for haplotype assembly

    GenHap HapCol
f SNPs cov #SNPs Avg HE Std dev HE Avg running time [s] Avg HE Std dev HE Avg running time [s]
100 30× 500 0.04 0.08 0.21 0.00 0.00 0.62
   1000 0.09 0.08 0.36 0.00 0.00 1.20
   5000 0.18 0.06 3.17 0.01 0.03 5.35
   10000 2.50 5.52 10.33 6.55 16.38 10.23
200 30× 500 0.09 0.14 0.34 0.00 0.00 0.50
   1000 0.09 0.10 0.63 0.01 0.03 0.96
   5000 3.61 3.43 6.07 0.38 0.78 4.90
   10000 2.15 1.62 17.24 N/A N/A N/A
  1. The performances were evaluated both in terms of HE and running time. The N/A symbol denotes that HapCol was not able to complete the execution on all the 15 instances