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Table 3 Results obtained by GenHap on the Roche/454 dataset with covā‰ƒ60Ɨ

From: GenHap: a novel computational method based on genetic algorithms for haplotype assembly

   

GenHap

f SNPs

cov

#SNPs

Avg HE

Std dev HE

Avg running time [s]

100

āˆ¼60Ɨ

500

0.00

0.00

0.26

  

1000

0.05

0.05

0.54

  

5000

0.10

0.03

6.57

  

10000

0.15

0.03

21.13

200

āˆ¼60Ɨ

500

0.00

0.00

0.37

  

1000

0.07

0.09

0.89

  

5000

1.13

1.72

11.17

  

10000

2.00

1.02

53.77

  1. The performances were evaluated both in terms of HE and running time
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BMC Bioinformatics

ISSN: 1471-2105

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