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Table 3 Results obtained by GenHap on the Roche/454 dataset with cov60×

From: GenHap: a novel computational method based on genetic algorithms for haplotype assembly

    GenHap
f SNPs cov #SNPs Avg HE Std dev HE Avg running time [s]
100 60× 500 0.00 0.00 0.26
   1000 0.05 0.05 0.54
   5000 0.10 0.03 6.57
   10000 0.15 0.03 21.13
200 60× 500 0.00 0.00 0.37
   1000 0.07 0.09 0.89
   5000 1.13 1.72 11.17
   10000 2.00 1.02 53.77
  1. The performances were evaluated both in terms of HE and running time