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Table 8 Numbers of unique entities recognized in the test corpus and successfully mapped with reference databases or ontologies

From: PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Database / Ontology

Drug

Gene

GenomicVariation

Phenotype

MeSH

1600

n/a

n/a

1625

ChEBI

285

n/a

n/a

n/a

ATC

78

n/a

n/a

n/a

NCBI Gene

n/a

4907

n/a

n/a

dbSNP

n/a

n/a

803

n/a

MEDDRA

n/a

n/a

n/a

0

PGxLOD

6449

5905

7937

22,335

Total

8412

10,812

8740

23,960

  1. Reference databases and ontologies are listed in Table 4
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BMC Bioinformatics

ISSN: 1471-2105

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