Table 2 Running time (minutes) for various distributed k-mer counting algorithms, with a time limit of 10 hours
From: Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics
| Â | k=28 | k=55 | ||
|---|---|---|---|---|
Algorithm | 32GB | 125GB | 32GB | 125GB |
FK | 23 | 82 | 38 | 119 |
KCH | 28 | 196 | – | – |
BioPig | 122 | Out of time | 450 | Out of time |
ADAM | Out of mem | Out of mem | Out of mem | Out of mem |