Table 1 Putative ORFs resulting from Blastp query for protein sequence similarity search obtained for O. sativa
From: FEDRO: a software tool for the automatic discovery of candidate ORFs in plants with c →u RNA editing
seq | start | stop | strand | start | orf | orf | blastp | similarity found |
|---|---|---|---|---|---|---|---|---|
nr. | type | type | type | codon | length | type | bitscore | organism |
1 | Main | Edited | fwd | 32014 | 393 | Sub | 266 | O. nivara |
2 | Main | Edited | fwd | 45130 | 360 | Sub | 230 | Z. mays subsp. mays |
3 | Main | Edited | fwd | 322576 | 339 | Sub | 226 | O. sativa Indica Group |
4 | Main | Edited | fwd | 323041 | 348 | Sub | 223 | O. sativa Indica Group |
5 | Main | Edited | fwd | 334132 | 309 | Sub | 208 | O. sativa Indica Group |
6 | Edited | Edited | rev | 414167 | 327 | New | 205 | G. hirsutum |
7 | Edited | Edited | fwd | 372740 | 408 | New | 203 | Z. mays subsp. mays |
8 | Edited | Edited | fwd | 332693 | 315 | Sub | 200 | L. perenne |