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Table 2 Putative ORFs resulting from Blastp query for protein sequence similarity search obtained for O. sativa

From: FEDRO: a software tool for the automatic discovery of candidate ORFs in plants with c →u RNA editing

seq

start

stop

strand

start

orf

orf

blastp

similarity found

nr.

type

type

type

codon

length

type

bitscore

organism

1

Edited

Edited

fwd

283844

330

New

197

V. faba

2

Edited

Edited

rev

315377

330

New

195

A. duranensis

3

Edited

Main

rev

314493

342

New

194

N. tabacum

4

Edited

Edited

rev

461810

324

New

193

T. aestivum

5

Main

Edited

fwd

391725

327

Sub

187

S. bicolor

6

Main

Edited

fwd

361601

354

Sub

182

T. aestivum

7

Main

Edited

fwd

394888

360

Sub

179

A. alpina

8

Edited

Edited

rev

240111

321

Int

177

C. cajan

9

Edited

Main

fwd

331900

444

Sub

176

S. italica

10

Main

Edited

rev

98164

387

Sub

164

P. edulis

11

Edited

Edited

rev

424636

315

Int

163

F. rimosivaginus

12

Edited

Edited

rev

404262

363

New

156

F. rimosivaginus

13

Edited

Main

fwd

316040

309

New

150

C. card. var. scolymus

14

Edited

Main

fwd

142093

312

New

149

S. bicolor

15

Main

Edited

fwd

393830

339

Sub

147

Z. mays subsp. mays

16

Main

Edited

fwd

367055

306

Sub

130

V. vinifera

17

Edited

Edited

fwd

364454

327

New

129

Z. mays subsp. mays

18

Main

Edited

rev

260161

324

Sub

113

T. subterraneum

19

Edited

Main

rev

201474

348

New

113

B. napus

20

Edited

Main

fwd

232846

339

New

103

A. thaliana

21

Edited

Main

rev

232370

387

New

88

G. raimondii

  1. Best hit bitscore and organism where the significant sequence similarity has been found are reported for each ORF. This table contains sequence similarity results corresponding to BLAST bitscore in the range 80−200