From: FEDRO: a software tool for the automatic discovery of candidate ORFs in plants with c →u RNA editing
seq | start | stop | strand | start | orf | orf | blastp | similarity found |
---|---|---|---|---|---|---|---|---|
nr. | type | type | type | codon | length | type | bitscore | organism |
1 | Edited | Edited | fwd | 283844 | 330 | New | 197 | V. faba |
2 | Edited | Edited | rev | 315377 | 330 | New | 195 | A. duranensis |
3 | Edited | Main | rev | 314493 | 342 | New | 194 | N. tabacum |
4 | Edited | Edited | rev | 461810 | 324 | New | 193 | T. aestivum |
5 | Main | Edited | fwd | 391725 | 327 | Sub | 187 | S. bicolor |
6 | Main | Edited | fwd | 361601 | 354 | Sub | 182 | T. aestivum |
7 | Main | Edited | fwd | 394888 | 360 | Sub | 179 | A. alpina |
8 | Edited | Edited | rev | 240111 | 321 | Int | 177 | C. cajan |
9 | Edited | Main | fwd | 331900 | 444 | Sub | 176 | S. italica |
10 | Main | Edited | rev | 98164 | 387 | Sub | 164 | P. edulis |
11 | Edited | Edited | rev | 424636 | 315 | Int | 163 | F. rimosivaginus |
12 | Edited | Edited | rev | 404262 | 363 | New | 156 | F. rimosivaginus |
13 | Edited | Main | fwd | 316040 | 309 | New | 150 | C. card. var. scolymus |
14 | Edited | Main | fwd | 142093 | 312 | New | 149 | S. bicolor |
15 | Main | Edited | fwd | 393830 | 339 | Sub | 147 | Z. mays subsp. mays |
16 | Main | Edited | fwd | 367055 | 306 | Sub | 130 | V. vinifera |
17 | Edited | Edited | fwd | 364454 | 327 | New | 129 | Z. mays subsp. mays |
18 | Main | Edited | rev | 260161 | 324 | Sub | 113 | T. subterraneum |
19 | Edited | Main | rev | 201474 | 348 | New | 113 | B. napus |
20 | Edited | Main | fwd | 232846 | 339 | New | 103 | A. thaliana |
21 | Edited | Main | rev | 232370 | 387 | New | 88 | G. raimondii |