Table 5 Number of overlapping intervals found for each benchmark
From: JOA: Joint Overlap Analysis of multiple genomic interval sets
Benchmarks | Number of overlapping intervals found | ||||
|---|---|---|---|---|---|
GROK | BEDOPS | BEDTools | JOA ST | JOA ISTF | |
2 small files | 145925 | 145925 | 145925 | 145925 | 145925 |
5 small files | 93080 | 93080 | 93080 | 93080 | 93080 |
(2.3M, 2.3M) | 2972223 | 753639 | 13903684 | 13903684 | 13903684 |
(6.4M, 6.4M) | 7369608 | 1292747 | 47936947 | 47936947 | 47936947 |
(9.2M, 9.2M) | 11553395 | 3046101 | 39217773 | 39217773 | 39217773 |
(6.4M, 9.2M) | 4746709 | 424074 | 19645676 | 19645676 | 19645676 |