Table 6 Statistical significance of PA2DE performance in terms of F1 scores relative to the RF and SVM algorithms on the test datasets
From: Positive-unlabelled learning of glycosylation sites in the human proteome
Type | Algorithm | 2007 | 2010 | 2013 |
|---|---|---|---|---|
N-linked | PA2DE | 6.35E-04 | 0.0369 | 6.07E-23 |
Random Forest | ||||
PA2DE | 5.61E-21 | 8.10E-06 | 6.96E-23 | |
SVM | ||||
PA2DE (V2.0) | 2.44E-09 | 0.0233 | 7.35E-40 | |
Random Forest | ||||
PA2DE (V2.0) | 1.09E-32 | 1.34E-06 | 8.33E-40 | |
SVM | ||||
O-linked | PA2DE | 0.0104 | 6.10E-04 | 1.86E-09 |
Random Forest | ||||
PA2DE | 0.4566 | 0.0210 | 9.64E-16 | |
SVM | ||||
PA2DE (V2.0) | 6.23E-04 | 1.04E-04 | 6.53E-20 | |
Random Forest | ||||
PA2DE (V2.0) | 0.0986 | 9.19E-04 | 8.19E-29 | |
SVM |