Table 2 Comparison of features provided by several RNA-Seq data visualization platforms
From: DEvis: an R package for aggregation and visualization of differential expression data
DEvis | PIVOT | TRAPR | scatr | Glimma | DESeq2 | |
|---|---|---|---|---|---|---|
Summary Plots | ✓ | ✓ | ✓ | |||
Dimensionality Reduction Plots | ✓ | ✓ | ✓ | ✓ | ✓ | |
Cluster Plots | ✓ | ✓ | ||||
Distribution Plots | ✓ | ✓ | ✓ | |||
Expression / Significance Plots | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
Feature Statistics Plots | ✓ | ✓ | ||||
Correlation / Co-expression Plots | ✓ | ✓ | ✓ | |||
Heat Maps | ✓ | ✓ | ✓ | |||
Volcano Plots | ✓ | ✓ | ✓ | |||
Data Aggregation | ✓ | ✓ | ||||
Aggregation Plots | ✓ | |||||
Normalization | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
Filtration / Feature Selection | ✓ | ✓ | ✓ | ✓ | ||
Project Management | ✓ | ✓ | ||||
ID Conversion | ✓ | ✓ | ||||
Publication Ready Figures | ✓ | ✓ | ✓ | ✓ |