Table 3 results of genotype calling on the test set of ClusterCall
fitTetra2NP | ClusterCall | |||||
|---|---|---|---|---|---|---|
Fam.AxS | Fam.RxP | Fam.WxL | Fam.AxS | Fam.RxP | Fam.WxL | |
Called | 87.5% | 69.9% | 88.9% | 66.9% | 51.5% | 68.1% |
Matching | 73.2% | 54.6% | 71.2% | 60.1% | 45.2% | 59.7% |
Not matching | 14.3% | 15.3% | 17.6% | 6.8% | 6.3% | 8.5% |
Not called | 12.5% | 30.1% | 11.1% | 33.1% | 48.5% | 31.9% |
> 90% in single category | 10.3% | 27.9% | 9.0% | 6.1% | 21.5% | 4.8% |
> 25% NAs | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% |
No model | 2.2% | 2.1% | 2.1% | 27.1% | 27.1% | 27.1% |
Proportion of matching calls | 83.7% | 78.1% | 80.2% | 89.9% | 87.8% | 87.6% |
Average proportion | 80.6% | 88.4% | ||||
Average “matching” | 66.3% | 55.0% | ||||