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Table 5 Statistical informations about validated predictions from RNA-Seq data

From: RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

 

C/G < 1.5

1.5 < = C/G < 2

2 < = C/G < 2.5

2.5 < = C/G < 3

C/G > = 3

Number of predictions

2930

1206

254

67

37

Read value ratios mean

13.3

9.3

7

10.2

10.5

Read value ratios std

168.1

25.7

9.4

13.1

10.5

Read value ratios median

3.2

3.3

3.4

4.4

5.2

Read value ratios > 100

33

13

0

0

0

  1. The number of predictions, the mean, the median and the standard deviation of read value ratios were reported for various window of the predicted RUT site C/G ratio values
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BMC Bioinformatics

ISSN: 1471-2105

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