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Table 1 An overview of existing programmatic visualization tools for genomic signal tracks

From: svist4get: a simple visualization tool for genomic tracks from sequencing experiments

 

svist4get

fluff

ngs.plot

ggbio

Gviz

ASCIIGenome

Command-line interface

yes

yes

yes

no

no

yes

Programming language

Python

Python

R, Python

R

R

Java

API

yes

no

no

yes

yes

no

Output

pdf, png

png

png, tiff

pdf, png

pdf, png

console (text)

Vector graphics output

yes

no

no

yes

yes

no

Reference

 

[9]

[10]

[8]

[7]

[5]

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BMC Bioinformatics

ISSN: 1471-2105

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