Fig. 1
From: Predicting enhancers in mammalian genomes using supervised hidden Markov models
The model. a Schematic illustration of the epigenetic environment at enhancers and promoters, derived from [6, 58]. b Schematic Markov chain of the underlying constricted Hidden Markov Model. c Epigenetic features of an example genomic region. d Model parameters. Left: state selection based on emission patterns of the foreground models. Selected states are encircled in green (enhancer nucleosomes), red (promoter nucleosomes), and yellow (accessibility). Right: emission and transition parameters of the full model