From: Predicting enhancers in mammalian genomes using supervised hidden Markov models
Cell type | Experiment | Target | Accession | Format |
---|---|---|---|---|
ESC E14 | ATAC-seq | - | GSE120376 | fastq |
 | ChIP-seq | H3K27ac | GSE120376 | fastq |
 |  | H3K4me1 | GSE120376 | fastq |
 |  | H3K4me3 | GSE120376 | fastq |
 |  | Nanog | GSE11431 | fastq |
 |  | Oct4 | GSE11431 | fastq |
 |  | Sox2 | GSE11431 | fastq |
 |  | CTCF | GSE29184 | fastq |
 |  | p300 | GSE29184 | fastq |
 |  | Pol II | GSE29184 | fastq |
 | MeDIP-seq | - | GSE3859 | fastq |
liver E12.5 | ATAC-seq | - | ENCSR302LIV | bam |
 | ChIP-seq | H3K27ac | ENCSR136GMT | bam |
 |  | H3K4me1 | ENCSR770OXU | bam |
 |  | H3K4me3 | ENCSR471SJG | bam |
liver E14.5 | ATAC-seq | - | ENCSR032HKE | fastq |
 | ChIP-seq | H3K27ac | ENCSR075SNV | bam |
 |  | H3K4me1 | ENCSR234ISO | bam |
 |  | H3K4me3 | ENCSR433ESG | bam |
lung E14.5 | ATAC-seq | - | ENCSR335VJW | fastq |
 | ChIP-seq | H3K27ac | ENCSR452WYC | bam |
 |  | H3K4me1 | ENCSR825OWH | bam |
 |  | H3K4me3 | ENCSR839WFP | bam |
lung E16.5 | ATAC-seq | - | ENCSR627OCR | fastq |
 | ChIP-seq | H3K27ac | ENCSR140UEX | bam |
 |  | H3K4me1 | ENCSR387YSD | bam |
 |  | H3K4me3 | ENCSR295PFM | bam |