Table 4 Comparison of MGSEA with moGSA. Overlap of significant gene sets at various cutoffs between moGSA and MGSEA as shown for (A) breast cancer and (B) GBM
Cutoff (%) | Number of gene sets in moGSA | Overlap with MGSEA |
|---|---|---|
A. Breast cancer | ||
5 | 56 | 9 |
10 | 112 | 34 |
15 | 168 | 51 |
20 | 225 | 78 |
25 | 281 | 105 |
30 | 337 | 130 |
35 | 393 | 150 |
40 | 449 | 174 |
45 | 505 | 197 |
50 | 562 | 221 |
55 | 618 | 244 |
60 | 674 | 266 |
65 | 730 | 285 |
70 | 786 | 313 |
75 | 842 | 335 |
80 | 898 | 354 |
85 | 955 | 370 |
90 | 1011 | 393 |
95 | 1067 | 409 |
100 | 1123 | 434 |
B. GBM | ||
5 | 57 | 44 |
10 | 115 | 80 |
15 | 172 | 124 |
20 | 230 | 166 |
25 | 287 | 207 |
30 | 345 | 240 |
35 | 402 | 277 |
40 | 460 | 308 |
45 | 517 | 338 |
50 | 575 | 367 |
55 | 632 | 398 |
60 | 689 | 424 |
65 | 747 | 452 |
70 | 804 | 481 |
75 | 862 | 517 |
80 | 919 | 550 |
85 | 977 | 577 |
90 | 1034 | 614 |
95 | 1092 | 649 |
100 | 1149 | 676 |