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Table 4 Comparison of MGSEA with moGSA. Overlap of significant gene sets at various cutoffs between moGSA and MGSEA as shown for (A) breast cancer and (B) GBM

From: MGSEA – a multivariate Gene set enrichment analysis

Cutoff (%) Number of gene sets in moGSA Overlap with MGSEA
A. Breast cancer
 5 56 9
 10 112 34
 15 168 51
 20 225 78
 25 281 105
 30 337 130
 35 393 150
 40 449 174
 45 505 197
 50 562 221
 55 618 244
 60 674 266
 65 730 285
 70 786 313
 75 842 335
 80 898 354
 85 955 370
 90 1011 393
 95 1067 409
 100 1123 434
B. GBM
 5 57 44
 10 115 80
 15 172 124
 20 230 166
 25 287 207
 30 345 240
 35 402 277
 40 460 308
 45 517 338
 50 575 367
 55 632 398
 60 689 424
 65 747 452
 70 804 481
 75 862 517
 80 919 550
 85 977 577
 90 1034 614
 95 1092 649
 100 1149 676