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Table 2 Partial conclusions from the inference of TFs regulation were verified by gene functional enrichment analysis

From: The cis-trans binding strength defined by motif frequencies facilitates statistical inference of transcriptional regulation

Conclusions

Pathways

P-values, upside*

P-values, downside*

Regulation

Enhance insulin sensitivity

Promote adipogenesis

Attenuate hyperlipidemia

PPAR signaling pathway (KEGG)

3.98e-8

≈1

↑

Peroxisome (KEGG)

4.62e-11

≈1

peroxisome organization

2.99e-4

≈1

Promote fatty acid metabolism

fatty acid metabolism (KEGG)

1.86e-9

≈1

↑

cellular lipid metabolic process (GO)

3.49e-7

≈1

long-chain fatty acid metabolic process (GO)

9.54e-6

≈1

very long-chain fatty acid metabolic process (GO)

6.73e-5

≈1

regulation of fatty acid oxidation (GO)

5.30e-4

≈1

fatty acid beta-oxidation (GO)

1.17e-5

≈1

Inhibit angiogenesis

blood vessel development (GO)

0.996

3.72e-3

↓

Reduce inflammation

intestinal immune network for IgA production (KEGG)

0.995

5.32e-3

↓

  1. * Gene functional enrichemnt in the up/down-side with Wilcox rank sum test, see Method.