Table 5 The most significant chromosome bands only enriched in our method
From: Generalized gene co-expression analysis via subspace clustering using low-rank representation
Chromosome band | P value | Module ID | CNVs validated in separate cohorts(TCGA, METABRIC) |
|---|---|---|---|
GSE31684 | |||
4q13.3 | 2.47e-06 | 13 | Yes,NA |
Yp11.2 | 8.25e-04 | 12 | No,NA |
Yq11.223 | 8.25e-04 | 12 | No,NA |
4q21.1 | 8.35e-04 | 4 | Yes,NA |
19p13.12 | 1.25e-03 | 5 | No,NA |
GSE54002 | |||
11p15.1 | 1.92e-12 | 44 | Yes,Yes |
11q12.2 | 1.61e-06 | 19 | Yes,Yes |
19q13.31 | 1.03e-05 | 61 | Yes,Yes |
9q31.3 | 2.12e-05 | 26 | No,Yes |
9q22.33 | 2.28e-05 | 26 | No,Yes |
GSE102484 | |||
8p11.23 | 3.97e-19 | 53 | Yes,Yes |
9q34.3 | 1.36e-09 | 14 | Yes,Yes |
15q22.31 | 4.21e-09 | 27 | Yes,Yes |
13q14.3 | 2.27e-08 | 18 | Yes,Yes |
7q36.3 | 4.12e-08 | 7 | Yes,Yes |