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Table 6 Examples of modules identified by our method with lower CCIs and higher PPI densities

From: Generalized gene co-expression analysis via subspace clustering using low-rank representation

Dataset Module(nGenes) nGenes Overlap CCI PPI density
GSE54002 LRR5(86) 16 0.457 3.81e-03
  PCC14(28)   0.498 0
GSE54002 LRR5(86) 54 0.457 3.81e-03
  WGCNA18(94)   0.467 2.38e-03
GSE54002 LRR7(78) 18 0.340 3.12e-03
  PCC33(20)   0.534 0
GSE54002 LRR7(78) 38 0.340 3.12e-03
  WGCNA26(77)   0.389 1.42e-03
GSE102484 LRR17(65) 15 0.291 2.46e-03
  PCC24(28)   0.400 0
GSE102484 LRR17(65) 28 0.291 2.46e-03
  WGCNA23(47)   0.382 1.03e-03
GSE102484 LRR8(96) 83 0.359 5.68e-03
  WGCNA12(115)   0.367 4.17e-03
  1. nGenes: number of genes in the module nGenes Overlap: number of genes in both modules