Skip to main content

Table 1 Data production

From: A new massively parallel nanoball sequencing platform for whole exome research

  Hiseq-1 Hiseq-2 Hiseq-3 Hiseq-4 BGISEQ-1 BGISEQ-2 BGISEQ-3 BGISEQ-4
Read length PE150a PE150 PE150 PE150 PE100 PE100 PE100 PE100
Raw data/Gb 10.04 9.83 9.78 9.00 7.81 7.90 7.65 7.56
Mean depth 99.77 99.78 100.37 99.66 102.27 101.88 101.92 101.77
Bases on targetb (%) 56.02 56.84 58.79 62.43 71.54 70.22 72.65 73.20
Reads on target (%) 70.85 71.32 71.70 70.31 83.36 82.14 83.18 84.15
Duplication rate 7.12 6.59 8.79 7.92 7.10 7.00 7.18 6.75
 Coverage (%) 99.74 99.66 99.72 99.75 99.82 99.83 99.82 99.82
 4x coverage (%) 99.51 99.37 99.43 99.49 99.63 99.64 99.62 99.61
 10x coverage (%) 98.89 98.67 98.60 98.74 98.89 98.93 98.85 98.84
 20x coverage (%) 97.10 96.80 96.11 96.16 96.29 96.30 96.01 96.18
  1. aPE, pair-end
  2. bBases aligned on target region/raw data amount