Annotation completeness | Type of GO classes | Best combinations | |
---|---|---|---|
Clustering methods | Semantic similarity measure | ||
complete | cellular | HAC | JiangConrath MAX |
DAG | Relevance MAX, JiangConrath BMA, Lin BMA | ||
multicellular | HAC | Resnik MAX, Weighted Jaccard, Weighted Cosine | |
DAG | Lin BMA | ||
incomplete | cellular | HAC | JiangConrath MAX, Weighted Cosine |
DAG | Lin BMA, Lin MAX, Relevance MAX, Resnik MAX | ||
multicellular | DAG | Lin BMA, Relevance MAX |