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Table 2 Average ARI scores of 10 experiments compared with other supervised model on human scRNA-seq dataset

From: Combining gene ontology with deep neural networks to enhance the clustering of single cell RNA-Seq data

Number of clusters

2

4

6

NN(dense)1

0.9123

0.7806

0.7427

NN(ppi/tf)1

0.9925

0.8696

0.7542

GONN1

0.9975

0.9036

0.8189

  1. For NN(dense) model, we set epoch number=200, learning rate=0.2. For NN(ppi/tf) model, the parameters are same as [15] epoch number=100, learning rate=0.1. For GONN model, we set epoch number=200, laerning rate=0.2