Scoring amino acid mutation to predict pandemic risk of avian influenza virus

Qiang, Xiaoli; Kou, Zheng

doi:10.1186/s12859-019-2770-0

BMC Bioinformatics

Table 1 Scores for the 178 signature amino acids of avian influenza viruses

From: Scoring amino acid mutation to predict pandemic risk of avian influenza virus

Num	Pro^a	Pos^b	Score	Num	Pro	Pos	Score	Num	Pro	Pos	Score
1	PB2	44	12.13	61	HA	124	12.51	121	NP	430	10.74
2	PB2	61	14.04	62	HA	137	10.16	122	NP	442	18.71
3	PB2	81	11.32	63	HA	141	10.61	123	NP	444	12.48
4	PB2	105	13.20	64	HA	144	10.61	124	NP	455	10.90
5	PB2	199	12.53	65	HA	155	10.56	125	NP	456	10.54
6	PB2	225	10.72	66	HA	158	10.36	126	NP	473	10.14
7	PB2	271	21.13	67	HA	160	16.89	127	NA	105	10.92
8	PB2	323	20.77	68	HA	163	11.46	128	NA	200	10.32
9	PB2	368	10.29	69	HA	164	10.57	129	NA	247	17.48
10	PB2	391	13.25	70	HA	169	10.33	130	NA	347	10.16
11	PB2	475	16.03	71	HA	171	10.35	131	NA	372	10.85
12	PB2	526	11.05	72	HA	172	10.15	132	NA	399	12.30
13	PB2	559	10.52	73	HA	189	13.15	133	M1	15	10.57
14	PB2	567	12.55	74	HA	190	19.80	134	M1	30	16.61
15	PB2	588	14.51	75	HA	193	13.31	135	M1	37	10.92
16	PB2	591	10.79	76	HA	203	12.47	136	M1	115	16.49
17	PB2	627	11.12	77	HA	224	16.94	137	M1	116	19.25
18	PB2	645	11.76	78	HA	225	14.94	138	M1	137	11.12
19	PB2	674	11.02	79	HA	226	15.14	139	M1	142	11.79
20	PB1	99	16.40	80	HA	228	15.09	140	M1	207	12.04
21	PB1	287	11.47	81	HA	246	10.95	141	M1	209	14.74
22	PB1	336	14.27	82	HA	272	12.19	142	M1	214	16.99
23	PB1	339	11.25	83	HA	276	12.12	143	M2	13	11.26
24	PB1	361	13.80	84	HA	285	10.01	144	M2	14	12.88
25	PB1	368	12.23	85	HA	299	10.21	145	M2	18	12.14
26	PB1	375	13.66	86	HA	327	12.71	146	M2	20	10.14
27	PB1	486	11.37	87	HA	367	11.62	147	M2	27	14.13
28	PB1	581	19.70	88	HA	393	13.32	148	M2	28	10.01
29	PB1	584	11.53	89	HA	406	11.53	149	M2	31	11.00
30	PB1	741	14.47	90	HA	413	10.90	150	M2	43	13.76
31	PB1_f2	11	11.53	91	HA	462	11.17	151	M2	50	10.52
32	PB1_f2	27	13.74	92	HA	490	10.82	152	M2	54	12.38
33	PB1_f2	59	10.05	93	HA	493	11.39	153	M2	57	11.57
34	PB1_f2	60	14.89	94	HA	530	10.65	154	M2	65	11.31
35	PB1_f2	73	11.33	95	HA	531	12.94	155	M2	66	13.29
36	PB1_f2	78	13.81	96	NP	16	11.77	156	M2	77	10.00
37	PB1_f2	83	14.22	97	NP	21	10.30	157	M2	78	17.00
38	PA	28	16.42	98	NP	33	15.12	158	M2	79	12.74
39	PA	55	13.03	99	NP	61	12.44	159	M2	86	15.40
40	PA	57	11.25	100	NP	99	22.49	160	M2	93	18.45
41	PA	65	10.78	101	NP	100	18.84	161	M2	95	11.66
42	PA	66	10.42	102	NP	119	10.82	162	NS1	7	10.23
43	PA	94	13.02	103	NP	136	13.19	163	NS1	22	11.57
44	PA	163	11.54	104	NP	189	11.58	164	NS1	53	10.59
45	PA	225	12.94	105	NP	190	13.23	165	NS1	60	13.19
46	PA	268	12.08	106	NP	283	17.10	166	NS1	74	10.03
47	PA	277	14.17	107	NP	289	11.37	167	NS1	81	14.88
48	PA	337	13.50	108	NP	293	12.50	168	NS1	114	13.45
49	PA	391	10.69	109	NP	305	20.80	169	NS1	125	11.55
50	PA	400	11.18	110	NP	313	16.72	170	NS1	171	10.83
51	PA	421	12.85	111	NP	345	13.40	171	NS1	189	13.00
52	PA	520	11.20	112	NP	351	10.14	172	NS1	205	11.00
53	PA	552	16.33	113	NP	353	10.09	173	NS1	215	11.37
54	PA	669	11.64	114	NP	357	21.26	174	NS1	227	12.45
55	HA	12	14.87	115	NP	372	12.50	175	NEP	32	12.43
56	HA	94	10.48	116	NP	375	12.09	176	NEP	70	18.26
57	HA	101	11.00	117	NP	400	10.68	177	NEP	89	11.59
58	HA	110	17.94	118	NP	422	14.84	178	NEP	107	14.74
59	HA	111	11.00	119	NP	425	12.20
60	HA	117	11.34	120	NP	426	10.69

^aViral protein; ^bPosition of amino acid residue as H3 subtype numbering

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