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Table 2 Performance comparison of default SCRMshaw with different starting points with SCRMshaw-HD

From: Computational enhancer prediction: evaluation and improvements

  Number of top predictions Training set sensitivity (%) REDfly recovery (%) Expression pattern sensitivity
5 to 125 bp offsets (range) SCRMshaw-HD 5 to 125 bp offsets (range) SCRMshaw-HD 5 to 125 bp offsets (range) SCRMshaw-HD 5 to 125 bp offsets (range) SCRMshaw-HD
mapping1.blastoderm 254–329 328 48.24–51.76 55.29 33.84–38.98 41.84 43.15–48.90 69.70
mapping1.dorsal_ectoderm 234–306 330 78.57–92.86 85.71 24.51–28.46 32.39 12.75–15.70 22.64
mapping1.mesoderm 241–278 332 58.62–72.41 72.41 22.27–25.74 30.55 19.92–27.01 27.78
mapping2.wing 364–550 453 38.64–54.55 47.73 22.86–24.45 28.47 4.31–7.43 9.84
  1. Bolded values are greater than or equal to the maximum value observed for default SCRMshaw