Table 2 Performance comparison of default SCRMshaw with different starting points with SCRMshaw-HD
From: Computational enhancer prediction: evaluation and improvements
| Â | Number of top predictions | Training set sensitivity (%) | REDfly recovery (%) | Expression pattern sensitivity | ||||
|---|---|---|---|---|---|---|---|---|
5 to 125 bp offsets (range) | SCRMshaw-HD | 5 to 125 bp offsets (range) | SCRMshaw-HD | 5 to 125 bp offsets (range) | SCRMshaw-HD | 5 to 125 bp offsets (range) | SCRMshaw-HD | |
mapping1.blastoderm | 254–329 | 328 | 48.24–51.76 | 55.29 | 33.84–38.98 | 41.84 | 43.15–48.90 | 69.70 |
mapping1.dorsal_ectoderm | 234–306 | 330 | 78.57–92.86 | 85.71 | 24.51–28.46 | 32.39 | 12.75–15.70 | 22.64 |
mapping1.mesoderm | 241–278 | 332 | 58.62–72.41 | 72.41 | 22.27–25.74 | 30.55 | 19.92–27.01 | 27.78 |
mapping2.wing | 364–550 | 453 | 38.64–54.55 | 47.73 | 22.86–24.45 | 28.47 | 4.31–7.43 | 9.84 |