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Fig. 2 | BMC Bioinformatics

Fig. 2

From: FGMP: assessing fungal genome completeness

Fig. 2

Estimation of genome completeness in fungal genomes. A comparison of genome completeness by multiple software tools using initial and latest genome assembly versions of 45 fungi. Genome completeness expressed as a percentage of expected markers (y-axis) is plotted against assembly size in megabases (x-axis). a FGMP completeness estimates based exclusively on protein markers are shown; (b) FGMP estimation based exclusively on highly conserved nucleotide segments; (c, d) BUSCO fungi and CEGMA completeness estimates respectively. In each plot, the dots represent distinct assemblies and color represents their status (red for the initial version and light blue for the latest version), and the diameters are proportional to the N50, a measure of assembly contiguity. Three representative species are highlighted in all panels (ellipses) to show the evolution of genome completeness between assembly versions. e Heat map of FGMP, BUSCO and CEGMA completeness estimates

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