Table 1 Summary of RNA-seq samples used in this paper
From: Ryūtō: network-flow based transcriptome reconstruction
Organism | SRA Accession | GEO Accession | Chosen By | # Spots | Cell Line | Localization | Length |
|---|---|---|---|---|---|---|---|
human | SRR307911 | GSM758566 | TransComb, Scallop | 41M | H1-hESC | cell | 76 |
SRR307912 | GSM758566 | - | 36M | H1-hESC | cell | 76 | |
SRR387661 | GSM840137 | TransComb, Scallop | 125M | K562 | cytosol | 76 | |
SRR307903 | GSM758562 | Scallop | 36M | BJ | cell | 76 | |
SRR534319 | GSM981256 | StringTie, Scallop | 25M | CD20+ | cell | 76 | |
SRR545695 | GSM984609 | StringTie | 40M | CD14+ | cell | 76 | |
SRR534307 | GSM981252 | Scallop | 167M | MCF-7 | cytosol | 101 | |
SRR545723 | GSM984621 | Scallop | 147M | HMEpC | cell | 101 | |
mouse | SRR203276 | SRX062280 | TransComb | 52M | dendritic | cell | 76 |
ERR1138641 | ERX1217510 | - | 29M | liver | cell | 101 |