Table 1 LocNuclei confusion matrix for 13 nuclear sub-structures
From: Detailed prediction of protein sub-nuclear localization
Observed:- > Predicted: | Chromatin | Nucleolus | Nuclear speckle | PML body | Nuclear lamina | Nuclear matrix | Nuclear envelope | Cajal body | Nuclear pore complex | Nucleoplasm | Kinetochore | Spindle apparatus | Perinucleolar | SUM predicted |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chromatin | 506 | 32 | 11 | 7 | 0 | 6 | 3 | 1 | 1 | 4 | 6 | 1 | 1 | 579 |
Nucleolus | 49 | 461 | 29 | 11 | 4 | 12 | 3 | 6 | 2 | 3 | 2 | 1 | 2 | 585 |
Nuclear speckle | 14 | 19 | 153 | 2 | 2 | 4 | 1 | 1 | 0 | 2 | 1 | 0 | 0 | 199 |
PML body | 12 | 13 | 9 | 38 | 2 | 3 | 2 | 1 | 1 | 0 | 1 | 0 | 0 | 82 |
Nuclear lamina | 5 | 6 | 3 | 2 | 41 | 3 | 7 | 0 | 2 | 0 | 1 | 0 | 0 | 70 |
Nuclear matrix | 7 | 9 | 5 | 4 | 2 | 25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 54 |
Nuclear envelope | 4 | 4 | 1 | 0 | 3 | 1 | 34 | 0 | 6 | 0 | 1 | 0 | 0 | 54 |
Cajal body | 3 | 5 | 2 | 0 | 1 | 1 | 0 | 10 | 0 | 1 | 0 | 0 | 0 | 23 |
Nuclear pore complex | 4 | 4 | 1 | 2 | 3 | 0 | 6 | 0 | 15 | 0 | 1 | 0 | 0 | 36 |
Nucleoplasm | 39 | 38 | 30 | 11 | 7 | 8 | 5 | 10 | 3 | 13 | 2 | 1 | 2 | 169 |
Kinetochore | 4 | 5 | 0 | 1 | 1 | 0 | 1 | 1 | 2 | 2 | 5 | 0 | 0 | 22 |
Spindle apparatus | 32 | 27 | 19 | 8 | 10 | 9 | 7 | 5 | 1 | 1 | 1 | 8 | 1 | 129 |
Perinucleolar | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 4 | 8 |
None | 18 | 27 | 29 | 9 | 4 | 2 | 2 | 6 | 1 | 2 | 4 | 3 | 3 | 110 |
% observed | 33 | 31 | 14 | 4 | 4 | 3 | 3 | 2 | 2 | 1 | 1 | 1 | 1 | |
SUM observed | 697 | 653 | 292 | 95 | 80 | 74 | 72 | 42 | 34 | 29 | 25 | 14 | 13 |