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Table 1 Key tools used by DNAscan in the three modes

From: DNAscan: personal computer compatible NGS analysis, annotation and visualisation

Stage DNAscan mode
  Fast Normal Intensive
Alignment HISAT2 HISAT2 + BWA mem HISAT2 + BWA mem
SNVs calling Freebayes Freebayes Freebayes
Small indels calling Freebayes Freebayes GATK HC