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Table 5 Comparison of lRMSD to the native structure of the lowest lRMSD decoy and average lRMSD to the native of the 10 best decoys (measured in Angstroms – Å) obtained by each algorithm on each of the 10 CASP domains

From: Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction

   

Lowest lRMSD

Avg. of the best 10

Domain

CASP

Length

Rosetta

Evo-Diverse

Rosetta

Evo-Diverse

T1008-D1

13

77

3 . 2

3.5

3 . 4

3.8

T0957s1-D1

13

108

6 . 9

7.1

8.1

7 . 6

T0892-D2

12

110

8

7 . 4

8.5

7 . 6

T0953s2-D3

13

93

8.7

7 . 9

9.3

8 . 3

T0960-D2

13

84

7 . 2

7.3

7 . 6

7 . 6

T0898-D2

12

55

6.5

5 . 9

6.7

6 . 3

T0859-D1

12

129

10.6

9 . 4

11.3

9 . 9

T0897-D1

12

138

9

9.3

10.8

9 . 9

T0886-D1

12

69

6.3

6 . 2

6.8

6 . 6

T0953s1-D1

13

67

7

5 . 7

7.4

6 . 1

  1. Lowest values for each target are marked in bold