Table 1 List of commonly used reference genes and their gene expression variability in 10,028 analyzed samples from TCGA database
Gene name | Description | Mean TPM value | CV(%) |
|---|---|---|---|
ACTB | Actin Beta | 4713.56 | 45.03 |
PGAM1 | Phosphoglycerate Mutase 1 | 239.83 | 56.36 |
ALDOA | Aldolase, Fructose-Bisphosphate A | 1576.45 | 57.97 |
TUBA1B | Tubulin Alpha 1b | 974.69 | 62.63 |
HPRT1 | Hypoxanthine Phosphoribosyltransferase 1 | 46.04 | 63.46 |
GAPDH | Glyceraldehyde-3-Phosphate Dehydrogenase | 5445.97 | 67.55 |
B2M | Beta-2-Microglobulin | 5083.41 | 69.57 |
PGK1 | Phosphoglycerate Kinase 1 | 365.70 | 69.98 |
LDHA | Lactate Dehydrogenase A | 575.04 | 79.40 |
PFKP | Phosphofructokinase, Platelet | 94.20 | 102.74 |
VIM | Vimentin | 1405.17 | 117.90 |
G6PD | Glucose-6-Phosphate Dehydrogenase | 64.06 | 138.24 |