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Table 3 Gene expression variability of experimentally selected reference genes in 10,028 TCGA database

From: Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

Gene name

Mean TPM

STDEV

CV (%)

FAU

1392.44

538.16

38.65

CTBP1

114.52

44.26

38.65

RPS13

1571.26

675.69

43.00

UBC

1320.33

569.84

43.16

PUM1

35.09

15.17

43.22

RPS11

3969.12

1752.48

44.15

TBP

12.82

5.72

44.60

SF3A1

45.63

20.37

44.65

ACTB

4713.56

2122.56

45.03

RPS23

299.30

135.68

45.33

MRPL19

34.12

15.71

46.04

RPS14

2799.60

1316.81

47.04

IPO8

21.25

10.10

47.54

RPS9

2121.51

1065.24

50.21

PES1

66.70

34.82

52.20

RPLP0

1869.13

976.37

52.24

HUWE1

69.01

36.87

53.43

HMBS

28.07

15.41

54.91

POLR2A

60.70

33.65

55.43

HSP90AB1

1004.81

560.40

55.77

PPIA

187.35

108.62

57.98

EEF1A1

2661.35

1585.93

59.59

HPRT1

46.04

29.22

63.46

SDHA

103.74

66.11

63.72

YWHAZ

490.69

321.32

65.48

RPS18

5059.90

3336.16

65.93

GAPDH

5445.97

3678.69

67.55

B2M

5083.41

3536.78

69.57

CASC3

45.64

36.59

80.17

ALAS1

53.97

66.85

123.86

YAP1

44.89

66.00

147.04