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Fig. 1 | BMC Bioinformatics

Fig. 1

From: A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

Fig. 1

Schematic representation of SCEED pipeline. (Left to right) First a simulated dataset is generated using SCEED “generateDataset” function with input parameters mentioned under “Data simulation”. Next, the simulated dataset is analyzed using different single cell analysis procedures. To test the performance of each single-cell algorithm, F1score which is a measure of test’s accuracy is computed. Finally, based on the F1score cutoff chosen by user, the best analysis procedure and the number of cells required to perform the single cell experiment are selected

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