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Table 2 Time complexity comparison between PBWT and mPBWT

From: Multi-allelic positional Burrows-Wheeler transform

  PBWT mPBWT
Prefix array O(NM) O(N(t+M))
Divergence array O(NM) O(tNM)
Long matches O(NM,#matches) O(tNM,#matches)
Set max matches O(NM) O(tNM)