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Table 2 Computing number of mismatches and gaps between MEMs in Fig.Ā 5

From: Pairwise alignment of nucleotide sequences using maximal exact matches

M i

M j

\({LT}_{i}^{j}\)

\({LQ}_{i}^{j}\)

\({LT}_{i}^{j}-{LD}_{i}^{j}\)

Gaps

Mismatches

M 1

M 2

0

2

-2

2 insertion

0

M 2

M 3

3

2

1

1 deletion

2

M 3

M 4

2

2

0

0

2

M 4

M 5

2

0

2

2 deletion

0

M 5

M 6

2

3

-1

1 insertion

2