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Table 1 Columns represent reference nucleotide, rows read nucleotide. If a C occurs in the read and a T in the reference, the score is equal to zero. The other possible mismatches receive a score of − 15. A match receives a score of 10

From: Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets

 

Reference genome

A

T

G

C

Read position

A

10

−15

− 15

− 15

T

−15

10

−15

− 15

G

−15

−15

10

−15

C

−15

0

−15

10