Table 2 Proportion of realizations with p < 0.05 for ES, ESavg, and < ESavg > for 25 splits. The proportion was calculated over 100 realizations of the dataset for each of the 21 gene sets using the 3 test statistics, ES, ESavg, and < ESavg > with M = 25. a indicates a control gene set with no association with phenotype
Gene Set | Proportion with p < 0.05 | ||
|---|---|---|---|
ES | ESavg | <ESavg> | |
a a | 0.06 | 0.08 | 0.05 |
b | 1.00 | 1.00 | 1.00 |
c | 0.82 | 0.81 | 0.92 |
d | 0.09 | 0.09 | 0.14 |
e | 0.38 | 0.39 | 0.46 |
f | 0.06 | 0.13 | 0.10 |
g | 0.01 | 0.00 | 0.01 |
h | 0.29 | 0.19 | 0.19 |
i | 0.10 | 0.16 | 0.07 |
j a | 0.07 | 0.07 | 0.07 |
k | 0.92 | 0.93 | 0.98 |
l | 0.81 | 0.88 | 0.91 |
m | 0.92 | 0.94 | 0.98 |
n | 0.34 | 0.35 | 0.43 |
o | 0.73 | 0.76 | 0.84 |
p | 0.42 | 0.56 | 0.64 |
q | 0.77 | 0.84 | 0.90 |
r | 0.22 | 0.26 | 0.22 |
s | 0.75 | 0.77 | 0.90 |
t | 0.36 | 0.38 | 0.44 |
u | 0.25 | 0.28 | 0.37 |