BMC Bioinformatics

Table 1 Comparison of our proposed PS-MCL to MLR-MCL and MCL in clustering quality and speed

From: PS-MCL: parallel shotgun coarsened Markov clustering of protein interaction networks

	(Proposed)
	PS-MCL	MLR-MCL [15]	MCL [8]
Fragmentation	Least	Less	Most
Ncut	Small	Moderate	Large
Speed	Fast	Slow	Fastest

Note that PS-MCL produces clustering with the best quality, and its speed is comparable to MCL, which is a baseline method, and much faster than MLR-MCL, which is our main competitor

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ISSN: 1471-2105

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