Table 3 Dataset description used in our experiments
From: PS-MCL: parallel shotgun coarsened Markov clustering of protein interaction networks
Name | Nodes | Edges | Density (10−4) | Description |
|---|---|---|---|---|
BioPlex [23] | 10,961 | 56,553 | 9.42 | PPI networks of Homo sapiens in the BioPlex 2.0 Network |
DIP-droso [21] | 22,595 | 69,148 | 2.71 | PPI network of Drosophila melanogaster |
Drosophila [24] | 6600 | 19,820 | 9.1 | PPI network of Drosophila melanogaster |
MINT [25] | 3872 | 56,937 | 75.97 | combined PPI network of 325 different organisms |
Yeast-1 [26] | 2353 | 36,790 | 132.95 | Genome-scale epistasis map of Schizosaccharomyces pombe |
Yeast-2 [27] | 2428 | 4606 | 15.63 | PPI network of Saccharomyces cerevisiae |
Yeast-3 [28] | 3886 | 57,782 | 76.55 | PPI network of Saccharomyces cerevisiae |
Yeast-4 [29] | 2223 | 7049 | 28.54 | PPI network of Saccharomyces cerevisiae |
DIP-yeast [21] | 4929 | 17,786 | 14.64 | PPI network of Saccharomyces cerevisiae |
BioGRID-homo [22] | 20,837 | 288,224 | 13.28 | PPI network of Homo sapiens |
DBLP | 317,080 | 1049,866 | 0.21 | Coauthorship network |