Fig. 1
From: TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data
Enriching SARS-CoV reads using the bat coronavirus genome as the reference. a and b show the aligned and recruited reads profile. The dataset was aligned by BWA with the default parameter ("-B 4, -A 1"). BWA is chosen to include more locally aligned reads in (a). The reads were recruited using the overlap cutoff of 150 bp. c displays the sequence identity between SARS-Cov and the bat coronavirus. The profile was generated using VISTA [41]