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Table 4 Overlap extension results using different seed set R0

From: TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

Align mismatch

Seed #

Recruited #

Align mismatch

Seed #

Recruited #

5%

21,925

200,650

10%

67,973

222,065

15%

162,454

263,029

20%

294,448

340,705

  1. ‘#’ represents ‘number’. The shaded regions in this table and Table 5 highlight the case where less recruited reads can produce better assembly results than aligned reads only
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BMC Bioinformatics

ISSN: 1471-2105

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